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Creators/Authors contains: "Mikucki, Jill"

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  1. The McMurdo Dry Valleys of Antarctica experience a range of selective pressures, including extreme seasonal variation in temperature, water and nutrient availability, and UV radiation. Microbial mats in this ecosystem harbor dense concentrations of biomass in an otherwise desolate environment. Microbial inhabitants must mitigate these selective pressures via specialized enzymes, changes to the cellular envelope, and the production of secondary metabolites, such as pigments and osmoprotectants. Here, we describe the isolation and characterization of a Gram-negative, rod-shaped, motile, red-pigmented bacterium, strain DJPM01, from a microbial mat within the Don Juan Pond Basin of Wright Valley. Analysis of strain DJMP01’s genome indicates it can be classified as a member of the Massilia frigida species. The genome contains several genes associated with cold and salt tolerance, including multiple RNA helicases, protein chaperones, and cation/proton antiporters. In addition, we identified 17 putative secondary metabolite gene clusters, including a number of nonribosomal peptides and ribosomally synthesized and post-translationally modified peptides (RiPPs), among others, and the biosynthesis pathway for the antimicrobial pigment prodigiosin. When cultivated on complex agar, multiple prodiginines, including the antibiotic prodigiosin, 2-methyl-3-propyl-prodiginine, 2-methyl-3-butyl-prodiginine, 2-methyl-3-heptyl-prodiginine, and cycloprodigiosin, were detected by LC–MS. Genome analyses of sequenced members of the Massilia genus indicates prodigiosin production is unique to Antarctic strains. UV-A radiation, an ecological stressor in the Antarctic, was found to significantly decrease the abundance of prodiginines produced by strain DJPM01. Genomic and phenotypic evidence indicates strain DJPM01 can respond to the ecological conditions of the DJP microbial mat, with prodiginines produced under a range of conditions, including extreme UV radiation. 
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  2. Aperiodic discharge of brine at Blood Falls forms a red-tinged fan at the terminus of Taylor Glacier, Antarctica. Samples from this discharge provide an opportunity for mineralogical study at a Martian analogue study site. Environmental samples were collected in the field and analyzed in the laboratory using Fourier transform infrared, Raman, visible to near-infrared, and Mössbauer spectroscopies. Samples were further characterized using microprobe and inductively coupled plasma optical emission spectroscopy for chemistry, and x-ray diffraction, scanning electron microscopy, and transmission electron microscopy for mineralogy, crystallography, and chemistry. The mineralogy of these samples is dominated by the carbonate minerals calcite and aragonite, accompanied by quartz, feldspar, halide, and clay minerals. There is no strong evidence for crystalline iron oxide/hydroxide phases, but compositionally and morphologically diverse iron- and chlorine-rich amorphous nanospheres are found in many of the samples. These results showcase the strengths and weaknesses of different analytical methods and underscore the need for multiple complementary techniques to inform the complicated mineralogy at this locale. These analyses suggest that the red color at Blood Falls arises from oxidation of dissolved Fe 2+ in the subglacial fluid that transforms upon exposure to air to form nanospheres of amorphous hydroxylated mixed-valent iron-containing material, with color also influenced by other ions in those structures. Finally, the results provide a comprehensive mineralogical analysis previously missing from the literature for an analogue site with a well-studied sub-ice microbial community. Thus, this mineral assemblage could indicate a habitable environment if found elsewhere in the Solar System. 
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  3. Maresca, Julia A. (Ed.)
    ABSTRACT We report the sequencing, assembly, and draft genome of Shewanella sp. strain BF02_Schw. The assembly contains 5,304,243 bp, with a GC content of 41.43%. 
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  4. Abstract. Since the 1960s, a deep groundwater system in Wright Valley, Antarctica, has been the hypothesized source of brines to hypersaline Don Juan Pond and Lake Vanda, both of which are rich in calcium and chloride. Modeling studies do not support other possible mechanisms, such as evaporative processes, that could have led to the current suite of ions present in both waterbodies. In 2011 and 2018, an airborne electromagnetic survey was flown over Wright Valley to map subsurface resistivity (down to 600 m) in exploration of liquid water. The surveys revealed widespread unfrozen brine in the subsurface near Lake Vanda, Don Juan Pond, and the North Fork of Wright Valley. While our geophysical survey can neither confirm nor deny deep groundwater connectivity between Lake Vanda and Don Juan Pond, it does point to the potential for deep valley-wide brine, likely within the Ferrar Dolerite formation. 
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  5. Abstract. Knowledge of past ice sheet configurations is useful for informing projections of future ice sheet dynamics and for calibrating ice sheet models. The topology of grounding line retreat in the Ross Sea sector of Antarctica has been much debated, but it has generally been assumed that the modern ice sheet is as small as it has been for more than 100 000 years (Conway et al., 1999; Lee et al., 2017; Lowry et al., 2019; McKay et al., 2016; Scherer et al., 1998). Recent findings suggest that the West Antarctic Ice Sheet (WAIS) grounding line retreated beyond its current location earlier in the Holocene and subsequently readvanced to reach its modern position (Bradley et al., 2015; Kingslake et al., 2018). Here, we further constrain the post-LGM (Last Glacial Maximum) grounding line retreat and readvance in the Ross Sea sector using a two-phase model of radiocarbon input and decay in subglacial sediments from six sub-ice sampling locations. In addition, we reinterpret high basal temperature gradients, measured previously at three sites in this region (Engelhardt, 2004), which we explain as resulting from recent ice shelf re-grounding accompanying grounding line readvance. Atone location – Whillans Subglacial Lake (SLW) – for which a sedimentporewater chemistry profile is known, we estimate the grounding linereadvance by simulating ionic diffusion. Collectively, our analyses indicate that the grounding line retreated over SLW 4300-2500+1500 years ago, and over sites on Whillans Ice Stream (WIS), Kamb Ice Stream (KIS), and Bindschadler Ice Stream (BIS) 4700-2300+1500, 1800-700+2700, and 1700-600+2800 years ago, respectively. The grounding line only recently readvanced back over those sites 1100-100+200, 1500-200+500, 1000-300+200, and 800±100 years ago for SLW, WIS, KIS, and BIS, respectively. The timing of grounding line retreat coincided with a warm period in the mid-Holocene to late Holocene. Conversely, grounding line readvance is coincident with cooling climate in the last 1000–2000 years. Our estimates for the timing of grounding line retreat and readvance are also consistent with relatively low carbon-to-nitrogen ratios measured in our subglacial sediment samples (suggesting a marine source of organic matter) and with the lack of grounding zone wedges in front of modern grounding lines. Based on these results, we propose that the Siple Coast grounding line motions in the mid-Holocene to late Holocene were primarily driven by relatively modest changes in regional climate, rather than by ice sheet dynamics and glacioisostatic rebound, as hypothesized previously (Kingslake et al., 2018). 
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  6. null (Ed.)
    SUMMARY Airborne electromagnetics (EM) is a geophysical tool well suited to mapping glacial and hydrogeological structures in polar environments. This non-invasive method offers significant spatial coverage without requiring access to the ground surface, enabling the mapping of geological units to hundreds of metres depth over highly varied terrain. This method shows great potential for large-scale surveys in polar environments, as common targets such as permafrost, ice and brine-rich groundwater systems in these settings can be easily differentiated because of their significant contrasts in electrical properties. This potential was highlighted in a 2011 airborne EM survey in the McMurdo Dry Valleys that mapped the existence of a large-scale regional groundwater system in Taylor Valley. A more comprehensive airborne EM survey was flown in November 2018 to broadly map potential groundwater systems throughout the region. Data collected in this survey displayed significant perturbations from a process called induced polarization (IP), an effect that can greatly limit or prevent traditional EM workflows from producing reliable geological interpretations. Here, we present several examples of observed IP signatures over a range of conditions and detail how workflows explicitly designed to handle IP effects can produce reliable geological interpretations and data fits in these situations. Future polar EM surveys can be expected to encounter strong IP effects given the likely presence of geological materials (e.g. ice and permafrost) that can accentuate the influence of IP. 
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